Detection of carotid intima and media thicknesses based on ultrasound B-mode images clustered with Gaussian mixture model / 生物医学工程学杂志

In clinic, intima and media thickness are the main indicators for evaluating the development of atherosclerosis. At present, these indicators are measured by professional doctors manually marking the boundaries of the inner and media on B-mode images, which is complicated, time-consuming and affected by many artificial factors. A grayscale threshold method based on Gaussian Mixture Model (GMM) clustering is therefore proposed to detect the intima and media thickness in carotid arteries from B-mode images in this paper. Firstly, the B-mode images are clustered based on the GMM, and the boundary between the intima and media of the vessel wall is then detected by the gray threshold method, and finally the thickness of the two is measured. Compared with the measurement technique using the gray threshold method directly, the clustering of B-mode images of carotid artery solves the problem of gray boundary blurring of inner and middle membrane, thereby improving the stability and detection accuracy of the gray threshold method. In the clinical trials of 120 healthy carotid arteries, means of 4 manual measurements obtained by two experts are used as reference values. Experimental results show that the normalized root mean square errors (NRMSEs) of the estimated intima and media thickness after GMM clustering were 0.104 7 ± 0.076 2 and 0.097 4 ± 0.068 3, respectively. Compared with the results of the direct gray threshold estimation, means of NRMSEs are reduced by 19.6% and 22.4%, respectively, which indicates that the proposed method has higher measurement accuracy. The standard deviations are reduced by 17.0% and 21.7%, respectively, which indicates that the proposed method has better stability. In summary, this method is helpful for early diagnosis and monitoring of vascular diseases, such as atherosclerosis.

Mejoramiento de contraste y segmentación en imágenes de úlceras del pie diabético / Contrast enhancement and segmentation in diabetic foot ulcer images

Introducción: El 3 a 5 por ciento de los pacientes diabéticos en Cuba sufren úlcera del pie diabético. Las imágenes fotográficas de estas úlceras permiten hacer evaluaciones cuantitativas de los tratamientos. En Cuba, dicha evaluación se hace manual o semiautomáticamente. No se registra software cubano que automáticamente realice la medición de las áreas de la lesión y permita conocer las características de la úlcera, antes y después de la aplicación de un tratamiento. Objetivo: Comparar cualitativamente métodos de preprocesamiento y segmentación de la úlcera, dada la ausencia de una regla de oro. Método: Estudio descriptivo y transversal en 6 pacientes diabéticos del Instituto Nacional de Angiología y Cirugía Vascular en octubre de 2018, con lesiones de grado I-IV en la escala de Wagner. Se utilizó el marco estereotáxico para extremidades FrameHeber03® para obtener imágenes planimétricas estandarizadas de las úlceras. Se obtuvieron 51 imágenes de úlceras que se preprocesaron mediante el algoritmo Transformada Wavelet Discreta Logarítmica en un modelo S-LIP y se determinó su borde mediante los métodos de segmentación Chan-Vese, modelo de mezclas gaussianas y GrabCut. Resultados: Se mostró la utilidad de preprocesar las imágenes para lograr mejores resultados en la segmentación. El mejor y más factible método de segmentación fue el de mezclas gaussianas. Los algoritmos resultaron ser más precisos en pacientes de piel oscura, debido al mayor contraste entre la piel y el borde de la úlcera. Conclusiones: El algoritmo de segmentación automática de mezclas gaussianas. puede incluirse en un software para medir el área de la úlcera(AU)

Introduction: The 3 to 5 percent of Cuban diabetic patients suffer from diabetic foot ulcer. The diabetic foot ulcer photographic images allow quantitative evaluations of a treatment. In Cuba, the ulcer area measurement is done manually or semi-automatically. There is no Cuban software reported that automatically measures the area, and allows knowing the state of the foot ulcer before and after a treatment. Goal: To compare qualitatively (given the absence of a gold standard) ulcer´s pre-processing and segmentation methods. Method: We develop a descriptive and transversal study with 6 diabetic patients from Nacional Institute of Angiology and Vascular Surgery during October, 2018, with lesions of degree I-IV in the Wagner scale. The stereotaxic frame FrameHeber03® was used for obtaining planimetric images of the ulcers. In all, 51 ulcer images were obtained, and then we pre-processed it by Logarithmic Discrete Wavelet Transform under a S-LIP model, and found the ulcer border with the segmentation methods Chan-Vese, Gaussian Mixture Model (GMM), and GrabCut. Results: The pre-processing step was crutial for obtaining good results in the segmentation step. The best performance was reached by the GMM segmentation method. The algorithms were more accurate in images with black skin patients, due to the high contrast between the skin and the ulcer border. Conclusions: The automatic segmentation method (GMM) could be included in a software for detecting the border of the diabetic foot ulcer(AU)

Detecting Manic State of Bipolar Disorder Based on Support Vector Machine and Gaussian Mixture Model Using Spontaneous Speech

OBJECTIVE: This study was aimed to compare the accuracy of Support Vector Machine (SVM) and Gaussian Mixture Model (GMM) in the detection of manic state of bipolar disorders (BD) of single patients and multiple patients. METHODS: 21 hospitalized BD patients (14 females, average age 34.5±15.3) were recruited after admission. Spontaneous speech was collected through a preloaded smartphone. Firstly, speech features [pitch, formants, mel-frequency cepstrum coefficients (MFCC), linear prediction cepstral coefficient (LPCC), gamma-tone frequency cepstral coefficients (GFCC) etc.] were preprocessed and extracted. Then, speech features were selected using the features of between-class variance and within-class variance. The manic state of patients was then detected by SVM and GMM methods. RESULTS: LPCC demonstrated the best discrimination efficiency. The accuracy of manic state detection for single patients was much better using SVM method than GMM method. The detection accuracy for multiple patients was higher using GMM method than SVM method. CONCLUSION: SVM provided an appropriate tool for detecting manic state for single patients, whereas GMM worked better for multiple patients’ manic state detection. Both of them could help doctors and patients for better diagnosis and mood state monitoring in different situations.

Human action and road condition recognition based on the inertial information / 生物医学工程学杂志

Rapid and accurate recognition of human action and road condition is a foundation and precondition of implementing self-control of intelligent prosthesis. In this paper, a Gaussian mixture model and hidden Markov model are used to recognize the road condition and human motion modes based on the inertial sensor in artificial limb (lower limb). Firstly, the inertial sensor is used to collect the acceleration, angle and angular velocity signals in the direction of , and axes of lower limbs. Then we intercept the signal segment with the time window and eliminate the noise by wavelet packet transform, and the fast Fourier transform is used to extract the features of motion. Then the principal component analysis (PCA) is carried out to remove redundant information of the features. Finally, Gaussian mixture model and hidden Markov model are used to identify the human motion modes and road condition. The experimental results show that the recognition rate of routine movement (walking, running, riding, uphill, downhill, up stairs and down stairs) is 96.25%, 92.5%, 96.25%, 91.25%, 93.75%, 88.75% and 90% respectively. Compared with the support vector machine (SVM) method, the results show that the recognition rate of our proposed method is obviously higher, and it can provide a new way for the monitoring and control of the intelligent prosthesis in the future.

Deep-learning-based automatic computer-aided diagnosis system for diabetic retinopathy

The high-pace rise in advanced computing and imaging systems has given rise to a new research dimension called computer-aided diagnosis (CAD) system for various biomedical purposes. CAD-based diabetic retinopathy (DR) can be of paramount significance to enable early disease detection and diagnosis decision. Considering the robustness of deep neural networks (DNNs) to solve highly intricate classification problems, in this paper, AlexNet DNN, which functions on the basis of convolutional neural network (CNN), has been applied to enable an optimal DR CAD solution. The DR model applies a multilevel optimization measure that incorporates pre-processing, adaptive-learning-based Gaussian mixture model (GMM)-based concept region segmentation, connected component-analysis-based region of interest (ROI) localization, AlexNet DNN-based highly dimensional feature extraction, principle component analysis (PCA)- and linear discriminant analysis (LDA)-based feature selection, and support-vector-machine-based classification to ensure optimal five-class DR classification. The simulation results with standard KAGGLE fundus datasets reveal that the proposed AlexNet DNN-based DR exhibits a better performance with LDA feature selection, where it exhibits a DR classification accuracy of 97.93% with FC7 features, whereas with PCA, it shows 95.26% accuracy. Comparative analysis with spatial invariant feature transform (SIFT) technique (accuracy—94.40%) based DR feature extraction also confirms that AlexNet DNN-based DR outperforms SIFT-based DR.

Quantitative Assessment Technology of Small Animal Myocardial Infarction PET Image Using Gaussian Mixture Model / 의학물리

Nuclear medicine images (SPECT, PET) were widely used tool for assessment of myocardial viability and perfusion. However it had difficult to define accurate myocardial infarct region. The purpose of this study was to investigate methodological approach for automatic measurement of rat myocardial infarct size using polar map with adaptive threshold. Rat myocardial infarction model was induced by ligation of the left circumflex artery. PET images were obtained after intravenous injection of 37 MBq 18F-FDG. After 60 min uptake, each animal was scanned for 20 min with ECG gating. PET data were reconstructed using ordered subset expectation maximization (OSEM) 2D. To automatically make the myocardial contour and generate polar map, we used QGS software (Cedars-Sinai Medical Center). The reference infarct size was defined by infarction area percentage of the total left myocardium using TTC staining. We used three threshold methods (predefined threshold, Otsu and Multi Gaussian mixture model; MGMM). Predefined threshold method was commonly used in other studies. We applied threshold value form 10% to 90% in step of 10%. Otsu algorithm calculated threshold with the maximum between class variance. MGMM method estimated the distribution of image intensity using multiple Gaussian mixture models (MGMM2, em leader MGMM5) and calculated adaptive threshold. The infarct size in polar map was calculated as the percentage of lower threshold area in polar map from the total polar map area. The measured infarct size using different threshold methods was evaluated by comparison with reference infarct size. The mean difference between with polar map defect size by predefined thresholds (20%, 30%, and 40%) and reference infarct size were 7.04+/-3.44%, 3.87+/-2.09% and 2.15+/-2.07%, respectively. Otsu verse reference infarct size was 3.56+/-4.16%. MGMM methods verse reference infarct size was 2.29+/-1.94%. The predefined threshold (30%) showed the smallest mean difference with reference infarct size. However, MGMM was more accurate than predefined threshold in under 10% reference infarct size case (MGMM: 0.006%, predefined threshold: 0.59%). In this study, we was to evaluate myocardial infarct size in polar map using multiple Gaussian mixture model. MGMM method was provide adaptive threshold in each subject and will be a useful for automatic measurement of infarct size.